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Publications & COV

2018

  • Dall'Agata M, Pagliarani G, Padmarasu S, Troggio M, Bianco L, Dapena E, Miñarro M, Aubourg S, Lespinasse Y, Durel C-E, Tartarini S (2018) Identification of candidate genes at the Dp-fl locus conferring resistance against the rosy apple aphid Dysaphis plantaginea. Tree Genetics & Genomes. in press.
  • Legeay M, Aubourg S, Renou J-P, Duval B (2018) Large scale study of anti-sense regulation by differential network analysis. BMC Systems Biology. in press.
  • Rigaill G, Balzergue S, Brunaud V, Blondet E, Rau A, Rogier O, Caius J, Maugis-Rabusseau C, Soubigou-Taconnat L, Aubourg S, Lurin C, Martin-Magniette ML, Delannoy E (2018) Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis. Brief Bioinform. 19(1):65-76.

2017

  • Daccord N, Celton J-M, Linsmith G, Becker C, Choisne N, Schijlen E, van de Geest H, Bianco L, Micheletti D, Velasco R, Di Pierro E, Gouzy J, Rees J, Muranty H, Durel C-E, Laurens F, Lespinasse Y, Gaillard S, Aubourg S, Quesneville H, Weigel D, van de Weg E, Troggio M, Bucher E (2017) High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nature Genet. 49(7): 1099-1106.
  • Goyet V, Billard E, Pouvreau JB, Lechat MM, Pelletier S, Bahut M, Monteau F, Spíchal L, Delavault P, Montiel G, Simier P. (2017) Haustorium initiation in the obligate parasitic plant Phelipanche ramosa involves a host-exudated cytokinin signal. J Exp Bot. 68(20):5539-5552.
  • Lima JJP, Buitink J, Lalanne D, Rossi RF, Pelletier S, da Sivla EAA, Leprince 0 (2017) Molecular characterization of the acquisition of longevity during seed maturation in soybean. Plos One. 12(7):e0180282
  • Urrestarazu J, Muranty H, Denancé C, Leforestier D, Ravon E, Guyader A, Guisnel R, Feugey L, Aubourg S, Celton J-M, Daccord N, Dondini L, Gregori R, Lateur M, Houben P, Ordidge M, Paprstein F, Sedlak J, Nybom H, Garkava-Gustavson L, Troggio M, Bianco L, Velasco R, Poncet C, Theron A, Moriya S, Bink M, Laurens F, Tartarini S, Durel C-E (2017) Genome-wide association mapping of flowering and ripening periods in apple. Frontiers in Plant Science. 8:1923.

2016

  • Chetouhi C, Bonhomme L, Lasserre-Zuber P, Cambon F, Pelletier S, Renou JP, Langin T. 2016.  Transcriptome dynamics of a susceptible wheat upon Fusarium head blight reveals that molecular responses to Fusarium graminearum infection fit over the grain development processes. Funct Integr Genomics.Mar;16(2):183-201.
  • Cunty A, Cesbron S, Briand M, Carrère S, Poliakoff  F, Jacques MA, Manceau C (2016) Draft genome sequences of five Pseudomonas syringae  pv. actinidifoliorum strains isolated in France. Brazilian Journal of Microbiology. 47(3):529-30
  • Jacques M-A, Denancé N, Legendre B, Morel E, Briand M, Mississipi S, Durand K, Olivier V, Portier P, Poliakoff F, Crouzillat D (2016) New variants of coffee-infecting Xylella fastidiosa issued from homologous recombination. Appl. Environ. Microbiol. 82:1556-1568.
  • Legeay M, Duval B, Renou J-P (2016) Inference and differential analysis of extended core networks : a way to study anti-sense regulation. IEEE International conference in Bioinformatics and Biomedecine. BIBM 15-18/12/2016
  • Legeay M, Duval B, Renou J-P (2016) Differential functional analysis and change motifs in gene networks to explore the role of Anti-sense transcription. Bioinformatics research and applications. 117-126. ISBN 978-3-319-38782-6
  • Rezki S, Campion C, Iacomi-Vasilescu B, Préveaux A, Toualbia Y, Bonneau S, Briand M, Laurent E, Hunault G, Simoneau P, Jacques MA, Barret M (2016) Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms. PeerJ. 4:e1923

2015

  • Barret M, Briand M, Bonneau S, Préveaux A, Valière S, Bouchez O, Hunault G, Simoneau P, Jacques MA.2015. Emergence shapes the structure of the seed-microbiota. Appl. Environ. Microbiol. 81 (4) : 1257-1266
  • Porto D.D., Bruneau M., Perini P., Anzanello R., Renou J.P., Santos H.P., Fialho F.B. & Revers L.F. .2015. Transcription profiling of the chilling requirement for bud break in apples: a putative role for FLC-like genes. Journal of Experimental Botany.66(9):2659-72.
  • Righetti K, Vu JL, Pelletier S, Vu BL, Glaab E, Lalanne D, Pasha A, Patel RV, Provart NJ, Verdier J, Leprince O, Buitink J.2015. Inference of Longevity-Related Genes from a Robust Coexpression Network of Seed Maturation Identifies Regulators Linking Seed Storability to Biotic Defense-Related Pathways. Plant Cell, Sep 26. pii: tpc.15.00632.
  • Roman H., Rapicault M., Miclot A.S., Larenaudie M., Kawamura K., Thouroude T., Chastellier A., Lemarquand A., Dupuis F., Foucher F., Lousteau S., Hibrand-Saint Oyant L. 2015. Genetic analysis of the flowering date and number of petals in rose. Tree Genetics and Genomes. DOI :10.1007/s11295-015-0906-6
  • Rousseau C, Hunault G, Gaillard S, Bourbeillon J, Montiel G, Simier P, Campion C, Jacques MA, Belin E, Boureau T.2015. Phenoplant: A web resource for the exploration of large Chlorophyll Fluorescence Image datasets. Plant methods. 0.475
  • Terrasson E, Darrasse A, Righetti K, Buitink J, Lalanne D, Ly Vu B, Pelletier S, Bolingue W, Jacques M-A, Leprince O.2015. Identification of a molecular dialogue between developing seeds of Medicago truncatula and seedborne xanthomonads. Journal of Experimental Botany. 66(13):3737-52.
  • Zaag R., Tamby J.P., Guichard C., Tariq Z., Rigaill G., Delannoy E., Renou J.P., Balzergue S., Mary-Huard T., Aubourg S., Martin-Magniette M.L. & Brunaud V. 2015. GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response. Nucleic Acids Res. Jan;43(Database issue):D1010-7
  • Zhang H., Dugé de Bernonville T., Body M., Glevarec G. Reichelt M., Unsicker S., Bruneau M., Renou J.P., Huguet E., Dubreuil G. & Giron D. 2015. Leaf-mining by Phyllonorycter blancardella reprograms the host-leaf transcriptome to modulate phytohormones associated with nutrient mobilization and plant defense. Journal of Insect Physiology. 84:114-127.

2014

  • Arias MC, Pelletier S, Hilliou F, Wattebled F, Renou JP & Christophe D'Hulst C. 2014. From dusk till dawn: the Arabidopsis thaliana sugar starving responsive network. Frontiers in Plant Science. Sep 22;5:482. doi: 10.3389/fpls. 2014. 00482
  • Aznar A., Chen N., Rigault M., Thomine S., Renou J.P., Soubigou-Taconnat L., Desmaële D., Joseph D., Mouille G., Boutet S. & Dellagi A. 2014. Scavenging iron: a novel mechanism of plant immunity activation by microbial siderophores. Plant Physiology.Apr;164(4):2167-83
  • Celton JM, Dheilly E, Guillou MC, Simonneau F, Juchaux M, Costes E, Laurens F, Renou JP. 2014. Additional amphivasal bundles in pedicel pith exacerbate central fruit dominance and induce self-thinning of lateral fruitlets in apple. Plant Physiology.Apr;164(4):1930-51
  • Celton JM, Gaillard S, Bruneau M, Pelletier S, Aubourg S, Martin-Magniette ML, Navarro L, Laurens F, Renou JP. 2014. Widespread anti-sense transcription in apple is correlated with siRNA production and indicates a large potential for transcriptional and/or post-transcriptional control. New Phytolologist. Jul; 203(1):287-99
  • Doustaly F., Combes F., Fiévet J, Berthet S., Hugouvieux V., Bastien O., Aranjuelo I., Leonhardt N., Rivasseau C., Carrière M., Vavasseur A., Renou J.P., Vandenbrouck Y. & Bourguignon J. 2014. Uranium perturbs signaling and iron uptake response in Arabidopsis thaliana roots. Metallomics. Mar 26;6(4):809-21
  • Dutheil JY, Gaillard S, Stukenbrock EH. 2014. MafFilter: a highly flexible and extensible multiple genome alignment files processor. BMC Genomics. 15:53
  • Jammes F., Leonhardt N., Tran D., Bousserouel H., Véry A.A., Renou J.P., Vavasseur A., Kwak J.M., Sentenac H., Bouteau F. & Leung J. 2014. Acetylated 1,3-diaminopropane antagonizes abscisic acid-mediated stomatal closing in Arabidopsis (97). Plant Journal. May 29. doi: 10.1111/tpj.12564
  • Mikol-Segonne S., Bruneau M., Celton J.M., Le Gall S., Francin-Allami M., Juchaux M., Laurens F., Orsel M. & Renou J.P. BMC Plant Biology. 14:1593. DOI: 10.1186/s12870-014-0375-3. 2014. Multiscale investigation of mealiness in apple: an atypical role for a pectin methylesterase during fruit maturation. BMC Plant Biology. Dec 31;14:375
  • Mondy S, Lenglet A, Cosson V, Pelletier S, Pateyron S, Gilard F, Scholte M, Brocard L, Couzigou JM, Tcherkez G, Péan M, Ratet P. 2014. GOLLUM [FeFe]-hydrogenase-like proteins are essential for plant development in normoxic conditions and modulate energy metabolism. Plant Cell & Environment.37:54-69
  • Planchais S., Cabassa C., Toka I., Justin A.M., Renou JP, Savouré A. & Carol P. 2014. BASIC AMINO ACID CARRIER 2 gene expression modulates arginine and urea content and stress recovery in Arabidopsis leaves. Frontiers in Plant Science. Jul 16; 5:330.
  • Santagostini P., Demotes-Mainard S., Huché-Thélier L., Leduc N., Bertheloot J., Guérin V., Bourbeillon J., Sakr S.,Boumaza R. 2014. Assessment of the visual quality of ornamental plants: Comparison of three methodologies in the case of the rosebush. Scientia Horticulturae.168, 17-26
  • Verdu C.F., Guyot S., Childebrand N., Bahut M., Celton J.M., Gaillard S., Lasserre-Zuber P. Troggio M., Guilet D., Laurens F. 2014. QTL Analysis and Candidate Gene Mapping for the Polyphenol Content in Cider Apple. PLoS One. 9(10): e107103
  • Vergne E, Dugé de Bernonville T, Dupuis F,  Sourice S, Cournol R, Berthelot P,  Barny MA, Brisset MN, Chevreau E. 2014. Membrane targeted HrpNEa can modulate apple defense gene expression. Molecular Plant-Microbe interactions. 27: 125-135

2013

  • Chupeau M.C., Granier F., Pichon O., Renou J.P., Gaudin V. & Chupeau Y. 2013 .Characterization of the Early Events leading to Totipotency in an Arabidopsis Protoplast Liquid Culture by Temporal Transcript Profiling.Plant Cell,Jul 31. [Epub ahead of print].
  • Gueguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, Galtier N, Belkhir K,Dutheil JY  2013 Bio++: efficient extensible libraries and tools for computational molecular evolution Molecular biology and evolution 30(8):1745-1750
  • Verdier J, Pelletier S, Lalanne D, Torres-Jerez I, Righetti K, Bandyopadhyay K, Leprince O, Chatelain E, Ly Vu B, Gouzy J, Gamas P, Udvardi M, and Buitink J 2013 A regulatory network-based approach dissects late maturation processes related to the acquisition of desiccation tolerance and longevity of Medicago truncatula seeds Plant Physiology pp.113.222380v1-pp.113.222380.
  • Ranocha P., Dima O., Nagy R., Felten J., Corratgé-Faillie C., Novák O., Morreel K., Lacombe B., Martinez Y., Pfrunder S., Jin X., Renou J.-P., Thibaud J.-B., Ljung K., Fischer U., Martinoia E., Boerjan W. & Goffner D. 2013 .Arabidopsis WAT1 is a vacuolar auxin transport facilitator required for auxin homeostasis.Nature Communications,In Press

2012

  • Dutilleul C, Benhassaine-Kesri G, Demandre C, Rézé N, Launay A, Pelletier S, Renou JP, Zachowski A, Baudouin E, Guillas I. 2012 Phytosphingosine-phosphate is a signal for AtMPK6 activation and Arabidopsis response to chilling. New Phytolologist Apr;194(1):181-91.
  • Petriacq P, de Bont L, Hager J, Didierlaurent L, Mauve C, Guerard F, Noctor G, Pelletier S, Renou JP, Tcherkez G, Gakiere B. 2012 Inducible NAD overproduction in Arabidopsis alters metabolic pools and gene expression correlated with increased salicylate content and resistance to Pst-AvrRpm1. Plant Journal May;70(4):650-65.
  • Denancé N, Ranocha P, Oria N, Barlet X, Rivière MP, Yadeta KA, Hoffmann L, Perreau F, Clément G, Maia-Grondard A, van den Berg GC, Savelli B, Fournier S, Aubert Y, Pelletier S, Thomma BP, Molina A, Jouanin L, Marco Y, Goffner D. 2012 Arabidopsis wat1 (walls are thin1)-mediated resistance to the bacterial vascular pathogen, Ralstonia solanacearum, is accompanied by cross-regulation of salicylic acid and indole metabolism Plant Journal in press
  • Fontaine JX, Tercé-Laforgue T, Armengaud P, Clément G, Renou JP, Pelletier S, Catterou M, Azzopardi M, Gibon Y, Lea PJ, Hirel B, Dubois F. 2012 Characterization of a NADH-Dependent Glutamate Dehydrogenase Mutant of Arabidopsis Demonstrates the Key Role of this Enzyme in Root Carbon and Nitrogen Metabolism. Plant Cell in press

2011

  • Schikora A, Virlogeux-Payant I, Bueso E, Garcia AV, Nilau T, Charrier A, Pelletier S, Menanteau P, Baccarini M, Velge P, Hirt H. 2011 Conservation of Salmonella infection mechanisms in plants and animals. PLoS One 6(9):e24112
  • Jay F, Wang Y, Yu A, Taconnat L, Pelletier S, Colot V, Renou JP, Voinnet O. 2011 Misregulation of AUXIN RESPONSE FACTOR 8 underlies the developmental abnormalities caused by three distinct viral silencing suppressors in Arabidopsis. PLoS Pathog. May;7(5):e1002035
  • Cheminant S, Wild M, Bouvier F, Pelletier S, Renou JP, Erhardt M, Hayes S, Terry MJ, Genschik P, Achard P. 2011 DELLAs regulate chlorophyll and carotenoid biosynthesis to prevent photooxidative damage during seedling deetiolation in Arabidopsis. Plant Cell May;23(5):1849-60.
  • Vandecasteele C, Teulat-Merah B, Morère-Le Paven MC, Leprince O, Ly Vu B, Viau L, Ledroit L, Pelletier S, Payet N, Satour P, Lebras C, Gallardo K, Huguet T, Limami AM, Prosperi JM, Buitink J. 2011 Quantitative trait loci analysis reveals a correlation between the ratio of sucrose/raffinose family oligosaccharides and seed vigour in Medicago truncatula. Plant Cell Environ. Sep;34(9):1473-87.