Publications

IRHS
IRHS
Emergence, systematics and ecology of plant-associated bacteria
Publications

Publications & COV

2023

  • Garin, T., Brin, C., Préveaux, A., Brault, A., Briand, M., Simonin, M., Barret, M., Journet, L., & Sarniguet, A. (2023). The Type VI secretion system of Stenotrophomonas rhizophila CFBP13503 limits the transmission of Xanthomonas campestris pv. campestris 8004 from radish seeds to seedlings. Molecular Plant Pathology, In press.
  • Bergemann, C. M., Avellan, A., Perrotta, B. G., Bernhardt, E. S., & Simonin, M. (2023). Seasonal Differences and Grazing Pressure Alter the Fate of Gold Nanoparticles in a Microcosm Experiment. Environmental Science & Technology, 57(37), 13970-13979. https://doi.org/10.1021/acs.est.3c01839
  • De Laender, F., Carpentier, C., Carletti, T., Song, C., Rumschlag, S. L., Mahon, M. B., Simonin, M., Meszena, G & Barabás, G. (2023). Mean species responses predict effects of environmental change on coexistence. Ecology Letters. https://doi.org/10.1111/ele.14278
  • Perrotta, B. G., Simonin, M., Colman, B. P., Anderson, S. M., Baruch, E., Castellon, B. T., ... & King, R. S. (2023). Chronic Engineered Nanoparticle Additions Alter Insect Emergence and Result in Metal Flux from Aquatic Ecosystems into Riparian Food Webs. Environmental Science & Technology. https://doi.org/10.1021/acs.est.3c00620
  • Rumschlag, S. L., Mahon, M. B., Jones, D. K., Battaglin, W., Behrens, J., Bernhardt, E. S., ... & Rohr, J. R. (2023). Density declines, richness increases, and composition shifts in stream macroinvertebrates. Science Advances, 9(18), eadf4896.DOI: 10.1126/sciadv.adf4896
  • Simonin, M., Préveaux, A., Marais, C., Garin, T., Arnault, G., Sarniguet, A., & Barret, M. (2023). Transmission of synthetic seed bacterial communities to radish seedlings: impact on microbiota assembly and plant phenotype. Peer Community Journal, 3. 10.24072/pcjournal.329
  • Gijsegem, F. V., Portier, P., Taghouti, G., & Pédron, J. (2023). Clonality and Diversity in the Soft Rot Dickeya solani Phytopathogen. International Journal of Molecular Sciences, 24(24), 17553. doi:10.3390/ijms242417553 
  • Abachi, H., Moallem, M., Taghavi, S. M., Hamidizade, M., Soleimani, A., Fazliarab, A., ... & Osdaghi, E. (2023). Garlic Bulb Decay and Soft Rot Caused by the Cross-Kingdom Pathogen Burkholderia gladioli. Plant Disease, In Press https://apsjournals.apsnet.org/doi/abs/10.1094/PDIS-08-23-1603-RE
  • Osdaghi, E., Taghavi, S. M., Hamidizade, M., Fazliarab, A., Hajian Maleki, H., Li, X., ... & Portier, P. (2023). Clavibacter lycopersici sp. nov.: a peach-colored actinobacterium isolated from symptomless tomato plant. International Journal of Systematic and Evolutionary Microbiology, 73(9), 006022. https://doi.org/10.1099/ijsem.0.006022
  • Corretto, E., Trenti, M., Štarhová Serbina, L., Howie, J. M., Dittmer, J., Kerschbamer, C., ... & Schuler, H. (2023). Multiple factors driving the acquisition efficiency of apple proliferation phytoplasma in Cacopsylla melanoneura. Journal of Pest Science, 1-16. 10.1007/s10340-023-01699-1
  • Štarhová Serbina, L., Corretto, E., Enciso Garcia, J. S., Berta, M., Giovanelli, T., Dittmer, J., & Schuler, H. (2023). Seasonal wild dance of dual endosymbionts in the pear psyllid Cacopsylla pyricola (Hemiptera: Psylloidea). Scientific Reports, 13(1), 16038. https://doi.org/10.1038/s41598-023-43130-w
  • Dittmer, J., Bredon, M., Moumen, B., Raimond, M., Grève, P., & Bouchon, D. (2023). The terrestrial isopod symbiont ‘Candidatus Hepatincola porcellionum’is a potential nutrient scavenger related to Holosporales symbionts of protists. ISME communications, 3(1), 18. https://doi.org/10.1038/s43705-023-00224-w
  • Peduzzi, C., Sagia, A., Burokiene, D., Nagy, I. K., Fischer-Le Saux, M., Portier, P., ... & Koebnik, R. (2023). Complete genome sequencing of three clade-1 xanthomonads reveals genetic determinants for a lateral flagellin and the biosynthesis of coronatine-like molecules in Xanthomonas. Phytopathology, https://doi.org/10.1094/PHYTO-10-22-0373-SC.
  • Alvandi, H., Taghavi, S. M., Khojasteh, M., Rahimi, T., Dutrieux, C., Taghouti, G., Jacques, MA., Portier, P., & Osdaghi, E. (2023). Pathovar-Specific PCR Method for Detection and Identification of Xanthomonas translucens pv. undulosa. Plant Disease, https://doi.org/10.1094/PDIS-11-22-2677-SR.

2022

  • Cesbron, S., Dupas, E., & Jacques, M. A. (2022). Evaluation of the AmplifyRP® XRT+ kit for the detection of Xylella fastidiosa by Recombinase Polymerase Amplification (RPA). PhytoFrontiers, https://doi.org/10.1094/PHYTOFR-03-22-0025-FI.
  • Alegria Terrazas, R., Robertson-Albertyn, S., Corral, A. M., Escudero-Martinez, C., Kapadia, R., Balbirnie-Cumming, K., Barret, M., Torres-Cortes, G., ... & Bulgarelli, D. (2022). Defining Composition and Function of the Rhizosphere Microbiota of Barley Genotypes Exposed to Growth-Limiting Nitrogen Supplies. Msystems, 7(6), e00934-22.
  • Chesneau, G., Laroche, B., Préveaux, A., Marais, C., Briand, M., Marolleau, B., Simonin, M., & Barret, M. (2022). Single seed microbiota: assembly and transmission from parent plant to seedling. Mbio, 13(6), e01648-22.
  • Portier, P., Taghouti, G., Bertrand, P. E., Briand, M., Dutrieux, C., Lathus, A., & Fischer-Le Saux, M. (2022). Analysis of the Diversity of Xylophilus ampelinus Strains Held in CIRM-CFBP Reveals a Strongly Homogenous Species. Microorganisms, 10(8), 1531.
  • Velasco-Amo, M. P., Arias-Giraldo, L. F., Olivares-García, C., Denancé, N., Jacques, M. A., & Landa, B. B. (2022). Use of traC Gene to Type the Incidence and Distribution of pXFAS_5235 Plasmid-Bearing Strains of Xylella fastidiosa subsp. fastidiosa ST1 in Spain. Plants, 11(12), 1562.
  • Mafakheri, H., Taghavi, S. M., Zarei, S., Portier, P., Dimkić, I., Koebnik, R., ... & Osdaghi, E. (2022). Xanthomonas bonasiae sp. nov. and Xanthomonas youngii sp. nov., isolated from crown gall tissues. International Journal of Systematic and Evolutionary Microbiology, 72(6), 005418.
  • Simonin, M., Briand, M., Chesneau, G., Rochefort, A., Marais, C., Sarniguet, A., & Barret, M. (2022). Seed microbiota revealed by a large‐scale meta‐analysis including 50 plant species. New Phytologist, 234(4), 1448-1463.
  • Rocca, J. D., Yammine, A., Simonin, M., & Gibert, J. P. (2022). Protist Predation Influences the Temperature Response of Bacterial Communities. Frontiers in microbiology, 13.
  • Masson, A. S., Vermeire, M. L., Leng, V., Simonin, M., Tivet, F., Thi, H. N., ... & Bellafiore, S. (2022). Enrichment in biodiversity and maturation of the soil food web under conservation agriculture is associated with suppression of rice-parasitic nematodes. Agriculture, Ecosystems & Environment, 331, 107913.
  • Mofini, M. T., Diedhiou, A. G., Simonin, M., Dondjou, D. T., Pignoly, S., Ndiaye, C., ... & Kane, A. (2022). Cultivated and wild pearl millet display contrasting patterns of abundance and co-occurrence in their root mycobiome. Scientific reports, 12(1), 1-17.
  • Pédron, J., van der Wolf, J. M., Portier, P., Caullireau, E., & Van Gijsegem, F. (2022). The Broad Host Range Plant Pathogen Dickeya dianthicola Shows a High Genetic Diversity. Microorganisms, 10(5), 1024.
  • Broders, K., Aspin, A., Bailey, J., Chapman, T., Portier, P., & Weir, B. S. (2022). Building More Resilient Culture Collections: A Call for Increased Deposits of Plant-Associated Bacteria. Microorganisms, 10(4), 741.
  • Zarei, S., Taghavi, S. M., Rahimi, T., Mafakheri, H., Potnis, N., Koebnik, R., ... & Osdaghi, E. (2022). Taxonomic Refinement of Xanthomonas arboricola. Phytopathology.
  • Mafakheri, H., Taghavi, S. M., Zarei, S., Rahimi, T., Hasannezhad, M. S., Portier, P., ... & Osdaghi, E. (2022). Phenotypic and molecular-phylogenetic analyses reveal distinct features of crown gall-associated Xanthomonas strains. Microbiology spectrum, 10(1), e00577-21.
  • Osdaghi, E., Taghouti, G., Dutrieux, C., Taghavi, S. M., Fazliarab, A., Briand, M., ... & Jacques, M. A. (2022). Whole Genome Resources of 17 Curtobacterium flaccumfaciens Strains Including Pathotypes of C. flaccumfaciens pv. betae, C. flaccumfaciens pv. oortii and C. flaccumfaciens pv. poinsettiae. Molecular Plant-Microbe Interactions.

2021

  • Fort T, Pauvert C, Zanne AE, Ovaskainen O, Caignard T, Barret M, Compant S, Hampe A, Delzon S, Vacher C. 2021. Maternal effects shape the seed mycobiome in Quercus petraea. New Phytologist. doi: 10.1111/NPH.17153
  • Liu, S., S. Decroocq, E. Harte, D. Tricon, A. Chague, G. Balakishiyeva, T. Kostritsyna, T. Turdiev, M. Fischer-Le Saux, S. Dallot, T. Giraud and V. Decroocq. 2021. Genetic diversity and population structure analyses in the Alpine plum (Prunus brigantina Vill.) confirm its affiliation to the Armeniaca section. Tree Genetics & Genomes. 17(1): 2. 10.1007/s11295-020-01484-6
  • Canivet CM, David N, Pailhoriès H, Briand M, Guy CD, Bouchez O, Hunault G, Fizanne L, Lannes A, Oberti F,  Fouchard I, Calès P, Diehl AM, Barret M, Boursier J. 2021. Cross-linkage between bacterial taxonomy and gene functions: a study of metagenome-assembled genomes of Gut Microbiota in adult non-alcoholic fatty liver disease. Aliment Pharmacol Ther. DOI: 10.1111/apt.16262
  • Chen NWG, Ruh M, Darrasse A, Foucher J, Briand M, Costa J, Studholme DJ, Jacques M-A. 2021. Common bacterial blight of bean: a model of seed transmission and pathological convergence. Molecular Plant Pathology. DOI: 10.1111/mpp.13067
  • Laala S, Cesbron S, Kerkoud M, Valentini F, Bouznad Z, Jacques M-A, Manceau C. 2021. Characterization of Xanthomonas campestris pv. campestris in Algeria. Phytopathologia Mediterranea. doi: 10.36253/phyto-11726
  • Graham EB, Averill C, Bond-Lamberty B, et al. 2021. Toward a generalizable framework of disturbance ecology through crowdsourced science. Frontiers in Ecology and Evolution. https://doi.org/10.3389/fevo.2021.588940
  • Rocca, JD, Muscarella ME, Peralta AL, Izabel-Shen D, Simonin M. 2021. Guided by Microbes: Applying Community Coalescence Principles for Predictive Microbiome Engineering. mSystems.  https://doi.org/10.1128/mSystems.00538-21
  • Rochefort A, Simonin M, Marais C, Guillerm-Erckelboudt AY, Barret M, Sarniguet A. 2021. Transmission of Seed and Soil Microbiota to Seedling. mSystems. https://doi.org/10.1128/mSystems.00446-21
  • Foucher J, Ruh M, Briand M, Préveaux A, Barbazange F, Boureau T, Jacques M-A, Chen NWG. 2021. Improving common bacterial blight phenotyping by using rub-inoculation and machine learning: cheaper, better, faster, stronger. Phytopathology. https://doi.org/10.1094/PHYTO-04-21-0129-R
  • Briand M, Ruh M, Darrasse A, Jacques M-A, Chen NWG. 2021. Complete and Circularized Genome Sequences of 17 Xanthomonas Strains Responsible for Common Bacterial Blight of Bean. Microbiology Resource Announcements. https://doi.org/10 .1128/MRA.00371-21
  • Ruh M, Briand M, Bonneau S, Darrasse A, Jacques M-A, Chen NWG. 2021. Complete and Circularized Genome Sequences of Three Xanthomonas Strains Pathogenic on Soybean and Alfalfa. Microbiology Resource Announcements. https://doi.org/10.1128/MRA.00537-21
  • Catara V, Cubero J, Pothier J-F, Bosis E, Bragard C, Ðermic E, Holeva MC, Jacques M-A, Petter F, Pruvost O, Robène I, Studholme DJ, Tavares F, Vicente JG, Koebnik R, Costa J. 2021. Trends in Molecular Diagnosis and Diversity Studies for phytosanitary Regulated Xanthomonas. Microorganisms. https://doi.org/10.3390/microorganisms9040862
  • Clavijo-Coppens F, Ginet N, Cesbron S, Briand M, Jacques M.-A, Ansaldi M. 2021. Novel Virulent Bacteriophages Infecting Mediterranean Isolates of the Plant Pest Xylella fastidiosa and Xanthomonas albilineans. Viruses. https://doi.org/10.3390/v13050725 
  • Kałużna M, Fischer-Le Saux M, Pothier JF, Jacques M-A, Obradović A, Tavares F, Stefani E. 2021. Xanthomonas arboricola pv. juglandis and pv. corylina: Brothers or distant relatives? Genetic clues, epidemiology, and insights for disease management. Molecular Plant Pathology. https://dx.doi.org/10.1111/mpp.13073
  • Román-Reyna V, Dupas E, Cesbron S, Marchi G, Campigli S, Hansen MA, Bush E, Prarat M, Shiplett K, Lewis Ivey ML, Pierzynski J, Miller SA, Hand FP, Jacques MA, Jacobs JM. 2021. Metagenomic sequencing for identification of Xylella fastidiosa from leaf samples. mSystems. in press

2020

  • Cohen SP, Luna EK, Lang JM, Ziegle J, Chang C, Leach JE, Fischer-Le Saux M, Portier P, Koebnik R, Jacobs JM. 2020. High-quality genome resource of Xanthomonas hyacinthi generated via long-read sequencing. Plant Dis (2020) DOI: 10.1094/pdis-11-19-2393-a
  • Lacault C, Briand M, Jacques M-A, Darrasse A. 2020. Zucchini vein clearing disease is caused by several lineages within Pseudomonas syringae species complex. Phytopathology (2020) DOI:10.1094/PHYTO-07-19-0266-R
  • Osdaghi E, Rahimi T, Taghavi S.M, Ansari M, Zarei S, Portier P, Briand M, Jacques M-A. 2020.Comparative genomics and phylogenetic analyses suggest several novel species within Clavibacter sp. including non-pathogenic tomato-associated strains. Appl Environ Microbiol 86:e02873-19. DOI: 10.1128/aem.02873-19
  • Prado A, Marolleau B, Vaissière BE, Barret M, Torres-Cortes G. 2020. Insect pollination: an ecological process involved in the assembly of the seed microbiota. Sci Rep 10:3575 DOI :10.1038/s41598-020-60591-5.
  • Gerlin L, Cottret L, Cesbron S, Taghouti G, Jacques M-A, Genin S, Baroukh C. 2020. Genome-scale investigation of the metabolic determinants generating bacterial fastidious growth. mSystems. 5:e00698-19. https://doi.org/10.1128/mSystems.00698-19.
  • Méline V, Brin C, Lebreton G, Ledroit L, Sochard D, Hunault G, Boureau T, Belin E. 2020. A computation method based on the combination of chlorophyll fluorescence parameters to improve the discrimination of visually similar phenotypes induced by bacterial virulence factors. Frontiers in Plant Science. 11:213, 10.3389/fpls.2020.00213
  • Tafifet L, Raio A, Holeva MC, Dikhai R, Kouskoussa CO, Cesbron S, Krimi Z. 2020.  Molecular characterization of Algerian Erwinia amylovora strains by VNTR analysis and biocontrol efficacy of Bacillus spp. and Pseudomonas brassicacearum antagonists. European Journal of Plant Pathology. 156:867-883. https://doi.org/10.1007/s10658-020-01938-6
  • Morinière L, Burlet A, Rosenthal ER, Nesme X, Portier P, Bull CT, Lavire C, Fischer-Le Saux M, Bertolla F.   2020. Clarifying the taxonomy of the causal agent of bacterial leaf spot of lettuce through a polyphasic approach reveals that Xanthomonas cynarae Trébaol 2000 emend. Timilsina et al. 2019 is a later heterotypic synonym of Xanthomonas hortorum Vauterin et al. 1995.     Systematic and Applied Microbiology     43(4): 126087. https://doi.org/10.1016/j.syapm.2020.126087
  • Cesbron, S., Dupas, E., Beaurepère, Q., Briand, M., Montes-Borrego, M., Velasco-Amo, M. D. P., ... & Jacques, M. A. 2020. Development of A Nested-MultiLocus Sequence Typing Approach for A Highly Sensitive and Specific Identification of Xylella fastidiosa Subspecies Directly from Plant Samples. Agronomy, 10(8), 1099.  10.3390/agronomy10081099
  • Portier P., Pedron J., Taghouti G., Dutrieux C., Barny M-A. 2020. Updated Taxonomy of Pectobacterium Genus in the CIRM-CFBP Bacterial Collection: When Newly Described Species Reveal “Old” Endemic Population. Microorganisms, 8(9): 1441. doi:10.3390/microorganisms8091441
  • Koebnik R., Burokiene D., Bragard C., Chang C., Fischer-Le Saux M., Kölliker R., Lang J., Leach J., Luna E., Portier P., Sagia A., Ziegle J., Cohen S. P., Jacobs J. 2020. The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 xanthomonads  Phytopathology . 10.1094/phyto-07-20-0273-sc
  • Desprez-Loustau ML, Balci Y, Cornara D, Gonthier P, Robin C, Jacques MA. 2020. Is Xylella fastidiosa a serious threat to European forests? Forestry, 1–17. doi:10.1093/forestry/cpaa029
  • Chesneau G, G Torres-Cortes, M Briand, A Darrasse, A Preveaux, C Marais, M-A Jacques, A Shade, M Barret. 2020. Temporal dynamics of bacterial communities during seed development and maturation. FEMS Microbiology Ecology, 96 :fiaa190. doi: 10.1093/femsec/fiaa190
  • Foucher J, M Ruh, A Préveaux, S Carrère, S Pelletier, M Briand, R-F Serre, M-A Jacques, NWG Chen. 2020. Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis. BMC Genomics, 21:566. Doi :10.1186/s12864-020-06972-6
  • Kerdraon L, Barret M, Balesdent M-H, Suffert F. 2020. Impact of a resistance gene against a fungal pathogen on the plant host residue microbiome: The case of the Leptosphaeria maculans–Brassica napus pathosystem. Molecular Plant Pathology, 21:1545-1558. DOI: 10.1111/mpp.12994
  • Briand M, Bouzid M, Hunault G, Legeay M, Fischer-Le Saux M, Barret M. 2020. A quick alternative method for resolving bacterial taxonomy using short identical DNA sequences in genomes or metagenomes. Peer Community In Genomics. 10.1101/569640

2019

  • Denancé N, M Briand, R Gaborieau, S Gaillard, M-A Jacques. 2019. Identification of genetic relationships and subspecies signatures in Xylella fastidiosa. BMC Genomics 20:239. DOI: 10.1186/s12864-019-5565-9
  • Dupas E, Briand M, Jacques M-A, Cesbron S. 2019. Novel tetraplex qPCR assays for simultaneous detection and identification of Xylella fastidiosa subspecies in plant tissues. Front Plant Sci 10:1732. DOI: 10.3389/fpls.2019.01732
  • Dupas E, Legendre B, Olivier V, Poliakoff F, Manceau C, Cunty A. 2019. Comparison of real-time PCR and droplet digital PCR for the detection of Xylella fastidiosa in plants. J Microbiol Meth 86-95. DOI: 10.1016/j.mimet. 2019. 05.010
  • Ferreira MASV, Bonneau S, Briand M, Cesbron S, Portier P, Darrasse A, Gama MAS, Barbosa MAG, Mariano RdLR, Souza EB and Jacques M-A. 2019. Xanthomonas citri pv. viticola affecting grapevine in Brazil: emergence of a successful monomorphic pathogen. Front Plant Sci 10:489. DOI: 10.3389/fpls. 2019. 00489
  • Gonçalves R. M, Balbi-Peña M. I, Soman J. M, Maringoni A. C, Taghouti G, Fischer-Le Saux M, Portier P. 2019. Genetic diversity of Curtobacterium flaccumfaciens revealed by multilocus sequence analysis. Eur J Plant Pathol 154:189-202. DOI: 10.1007/s10658-018-01648-0
  • Kerdraon L, Balesdent MH, Barret M, Laval V, Suffert F. 2019. Crop residues in wheat-oilseed rape rotation system: a pivotal, shifting platform for microbial meetings. Microb Ecol 77:931-945. DOI: 10.1007/s00248-019-01340-8
  • Kerdraon L, Barret M, Laval V, Suffert F. 2019. Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat. Microbiome.7:125. DOI: 10.1186/s40168-019-0736-0
  • Khenfous-Djebari B, Kerkoud M, Fischer-Le Saux M, Benhassine T, Bouznad Z, Koebnik R, Bragard C 2019. Isolation of atypical wheat-associated xanthomonads in Algeria. Phytopathol Mediter 58: 497-506 . DOI:10.14601/Phyto-10855
  • Meline V, Delage W, Brin C, Li-Marchetti C, Sochard D, Arlat M, Rousseau C, Darrasse A, Briand M, Lebreton G, Portier P, Fischer-Le Saux M, Durand K, Jacques M-A, Belin E, Boureau T. 2019. Role of the acquisition of a Type 3 Secretion System in the emergence of novel pathogenic strains of Xanthomonas. Mol Plant Pathol 20:33-50. DOI:10.1111/mpp.12737
  • Ogier JC, Pagès S, Galan M, Barret M, Gaudriault S. 2019. rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing. BMC Microbiol 19:171. DOI: 10.1186/s12866-019-1546
  • Pédron J, Bertrand C, Taghouti G, Portier P, Barny M-A. 2019. Pectobacterium aquaticum sp. nov, isolated from waterways. Int J System Environ Microbiol 69:745–751. DOI: 10.1099/ijsem.0.003229
  • Portier P, Pédron J, Taghouti G, Fischer-Le Saux M, Caullireau E, Bertrand C, Laurent A, Chawki K, Oulgazi S, Moumni M, Andrivon D, Dutrieux C, Faure D, Hélias V, Barny M-A. 2019.Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov, proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov, emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov, isolated from streams and symptoms on diverse plants. Int J System Environ Microbiol 69:3214–3223. DOI: 10.1099/ijsem.0.003611
  • Rochefort A, Briand M, Marais C, Wagner MH, Laperche A, Vallee P, Barret M, Sarniguet A. 2019. Influence of environment and host plant genotype on the structure and diversity of the Brassica napus seed microbiota. Phytobiomes 3:326-33 DOI: 10.1094/PBIOMES-06-19-0031-R
  • Timilsina S, Kara S, Jacques M-A, Potnis N, Minsavage GV, Vallad GE, Jones JB, Fischer-Le Saux M. 2019. Reclassification of Xanthomonas gardneri (ex Šutic 1957) Jones et al. 2006 as a later heterotypic synonym of Xanthomonas cynarae Trebaol et al. 2000 and description of X. cynarae pv. cynarae and X. cynarae pv. gardneri based on whole genome analyses. Int J Syst Evol Microbiol 69:343–349. DOI: 10.1099/ijsem.0.003104
  • Torres-Cortés G, Garcia BJ, Compant S, Rezki S, Jones P, Préveaux A, Briand M, Roulet A, Bouchez O, Jacobson D, Barret M. 2019. Differences in resource use lead to coexistence of seed-transmitted microbial populations. Sci Rep 9:e6648. DOI: 10.1038/s41598-019-42865-9

2018

  • Ansari M, Mohsen Taghavi S, Zarei S, Miri K, Portier P, Osdaghi E. 2018. Pathogenicity and molecular-phylogenetic analysis revealed a distinct position of the banana finger-tip rot pathogen among the Burkholderia cenocepacia genomovars. Plant Pathol 68:804–815. DOI: 10.1111/ppa.12976
  • Bartoli C, Frachon L, Barret M, Rigal M, Huard-Chauveau C, Mayjonade B, Zanchetta C, Bouchez O, Roby D, Carrere S, Roux F. 2018. In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana. ISME J 12:2024-2038. DOI: 10.1038/s41396-018-0152-7
  • Chen NWG, Serres-Giardi L, Ruh M, Briand M, Bonneau S, Darrasse A, Barbe V, Gagnevin L, Koebnik R, Jacques M-A. 2018. Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean. BMC Genomics 19:606. DOI: 10.1186/s12864-018-4975-4
  • Chen NWG, Thareau V, Ribeiro T, Magdelenat G, Ashfield T, Innes RW, Pedrosa-Harand A, Geffroy V. 2018a. Common bean subtelomeres are hot spots of recombination and favor resistance gene evolution. Front Plant Sci 9:1185. DOI: 10.3389/fpls. 2018. 01185
  • Darrasse A, Barret M, Cesbron S, Compant S, Jacques M-A. 2018b. Niches and routes of transmission of Xanthomonas citri pv. fuscans to bean seeds. Plant Soil 422:115-128. DOI: 10.1007/s11104-017-3329-3
  • Escobar Rodriguez C, Mitter B, Barret M, Sessitsch A, Compant S. 2018. Commentary: seed bacterial inhabitants and their routes of colonization. Plant Soil 422:129-134. DOI: 10.1007/s11104-017-3368-9
  • López MM, Lopez-Soriano P, Garita-Cambronero J, Beltrán C, Taghouti G, Portier P, Cubero J, Fischer-Le Saux M, Marco-Noales E. 2018. Xanthomonas prunicola sp. nov, a novel pathogen that affects nectarine (Prunus persica var. nectarina) trees. Int J Systematic Environ Microbiol 68:1857-1866. DOI: 10.1099/ijsem.0.002743
  • Mensi I, Jabnoun-Khiareddine H, Zarrougui NE, Ben Zahra H, Cesbron S, Jacques MA, Daami-Remadi M. 2018. First report of tomato bacterial speck caused by Pseudomonas syringae pv. tomato in Tunisia. New Dis Rep. 38:21. DOI: 10.5197/j.2044-0588. 2018. 038.021
  • Nelson E, Simoneau P, Barret M, Mitter B, Compant S. 2018. Editorial special issue: the soil, the seed, the microbes and the plant. Plant Soil 422:1-5. DOI: .org/10.1007/s11104-018-3576
  • Osdaghi E, Portier P, Briand M, Taghouti G, Jacques M-A. 2018. Draft genome sequences of the type strains of three Clavibacter subspecies and atypical peach-colored strains isolated from tomato. Microbiol Resour Announc 7:e01357-18.P. DOI: 10.1128/MRA.01357-18.
  • Rezki S, Campion C, Simoneau P, Jacques M-A, Shade A, Barret M. 2018. Assembly of seed-associated microbial communities within and across successive plant generations. Plant Soil 422:67-79. DOI: 0.1007/s11104-017-3451-2
  • Svanella-Dumas L, Theil S, Barret M, Candresse T. 2018. Complete genomic sequence of Raphanus sativus cryptic virus 4 tRsCV4), a novel alphapartitivirus from radish. Arch Virol 163:1097-1100. DOI: .org/10.1007/s00705-017-3693-6
  • Torres-Cortés G, Bonneau S, Bouchez O, Genthon C, Briand M, Jacques M-A and Barret M. 2018. Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence. Front Plant Sci 9:902. DOI: 10.3389/fpls. 2018. 00902
  • Valenzuela M, Besoain X, Durand K, Cesbron S, Fuentes S, Claverías F, Jacques M-A and Seeger M. 2018. Clavibacter michiganensis subsp. michiganensis strains from Central Chile exhibit low genetic diversity and sequence types match strains in other parts of the world. Plant Pathology 67 :1944–1954. DOI:10.1111/ppa.1291

2017

  • Denancé N, Legendre B, Briand M, Olivier V, de Boisseson C, Poliakoff F, Jacques M-A. 2017. Several subspecies and sequence types are associated with the emergence of Xylella fastidiosa in natural settings in France. Plant Pathol 66:1054–1064. DOI:10.1111/ppa.12695
  • Merda D, Briand M, Bosis E, Rousseau C, Portier P, Barret M, Jacques M-A, Fischer-Le Saux M. 2017. Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens. Mol Ecol 26:5939-5952. DOI: 10.1111/mec.14343
  • Osdaghi E, Forero-Serna N, Bolot S, Fisher-Le Saux M, Jacques M-A, Portier P, Carrère S, Koebnik R. 2017. High-quality draft genome sequence of Curtobacterium sp. strain Ferrero. Genome Announc 5:e01378-17. DOI:10.1128/genomeA.01378-17
  • Richard D, Boyer C, Lefeuvre P, Canteros BI, Beni-Madhu S, Portier P, Pruvost O. 2017. Complete genome sequences of six copper-resistant Xanthomonas strains causing bacterial spot of solaneous plants, belonging to X. gardneri, X. euvesicatoria, and X. vesicatoria, using long-read technology. Genome Announc :e01693-16. DOI : 10.1128/genomeA.01693-16.
  • Ruh M, Briand M, Bonneau S, Jacques M-A, Chen NWG. 2017. First complete genome sequences of Xanthomonas citri pv. vignicola strains CFBP7111, CFBP7112, and CFBP7113 obtained using long-read technology. Genome Announc 5:e00813-17. DOI: 10.1128/genomeA.00813-17
  • Ruh M, Briand M, Bonneau S, Jacques M-A, Chen NWG. 2017. Xanthomonas adaptation to common bean is associated with horizontal transfers of genes encoding TAL effectors. BMC Genomics 18:670. DOI: 10.1186/s12864-017-4087-6
  • Shade A, Jacques M-A, Barret. 2017. Ecological patterns of seed microbiome diversity, transmission, and assembly. Curr Op Microbiol 37:15–22. DOI: 0.1016/j.mib.2017.03.010
  • Thapa SP, Pattathil S, Hahn MG, Jacques M-A, Gilbertson RL, Coaker G. 2017. Comparative genomic analysis of Clavibacter michiganensis reveals insight into virulence strategies of Gram-positive bacterial pathogens. Mol Plant Pathol Interact 30:786–802. DOI: 10.1094/MPMI-06-17-0146-R

2016

  • Barret M, Guimbaud JF, Darrasse A, Jacques MA. 2016. Plant microbiota affects seed transmission of phytopathogenic micro-organisms. Mol Plant Pathol 17:791–795. DOI: 10.1111/mpp.12382
  • Bonants P, Streito JC, Elphinstone J, Portier P, Robert V, Bluemel S, van der Blom M, Gentit P, de Vos P, Petter F. 2016. Q-collect: results of a European Union project to improve the status of reference collections important for plant health. EPPO Bulletin 46:348-358. DOI: 10.1111/epp.12295
  • Boursier J, Mueller O, Barret M, Machado M, Fizanne L, Araujo-Perez F, Guy CD, Seed PC, Rawls JF, David LA, Hunault G, Oberti F, Cales P, Diehl AM. 2016. The severity of nonalcoholic fatty liver disease is associated with gut dysbiosis and shift in the metabolic function of the gut microbiota. Hepatology 63:764-775. DOI: 10.1002/hep.28356
  • Croce V, Pianzzola MJ, Durand K, González-Arcos M, Jacques MA, Siri MI. 2016. Multilocus sequence typing reveals high variability among Clavibacter michiganensis subsp. michiganensis strains affecting tomato crops in Uruguay. Eur J Plant Pathol 144:1-13. DOI: 10.1007/s10658-015-0738-0
  • Cunty A, Cesbron S, Briand M, Carrère S, Poliakoff F, Jacques MA, Manceau C. 2016. Draft genome sequences of five Pseudomonas syringae pv. actinidifoliorum strains isolated in France. Braz J Microbiol 47:529-530. DOI: 10/2016/j.bjm. 2016. 04.023
  • Denancé N, Lahaye T, and Noël LD. 2016. Editorial: Genomics and effectomics of the crop killer Xanthomonas. Front Plant Sci 7:71. DOI: 10.3389/fpls.2016.00071
  • Giovanardi D, Bonneau S, Gironde S, Fischer-Le Saux M, Manceau C, Stefani E. 2016. Morphological and genotypic features of Xanthomonas arboricola pv. juglandis populations from walnut groves in Romagna region, Italy. Eur J Plant Pathol 145:1-16. DOI: 10.1007/s10658-015-0809-2
  • Jacques M-A, Arlat M, Boulanger A, Boureau T, Carrère S, Cesbron S, Chen N.W.G, Cociancich S, Darrasse A, Denancé N, Fischer-Le Saux M, Gagnevin L, Koebnik R, Lauber E, Noël LD, Pieretti I, Portier P, Pruvost O, Rieux A, Robène I, Royer M, Szurek B, Verdier V, Vernière C. 2016. Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas. Annu Rev Phytopathol 54:163-187. DOI: 10.1146/annurev-phyto-080615-100147
  • Jacques M-A, Denancé N, Legendre B, Morel E, Briand M, Mississipi S, Durand K, Olivier V, Portier P, Poliakoff F, Crouzillat D. 2016. New variants of coffee-infecting Xylella fastidiosa issued from homologous recombination. Appl Environ Microbiol 82:1556 –1568. DOI: 10.1128/AEM.03299-15
  • Klaedtke S, Jacques MA, Raggi L, Préveaux A, Bonneau S, Negri V, Chable V, Barret M. 2016. Terroir is a key driver of seed-associated microbial assemblages. Environ Microbiol 18:1792-1804. DOI: 10.1093/jxb/erv167
  • Lhomme E, Onno B, Chuat V, Durand K, Orain S, Valence-Bertel F, Dousset X, Jacques M-A. 2016. Genotypic diversity of Lactobacillus sanfranciscensis strains isolated from French organic sourdoughs. Int J Food Microbiol .226:13-19. DOI: 10.1016/j.ijfoodmicro. 2016. 03.008
  • López-Soriano P, Boyer K, Cesbron S, Morente M C, Peñalver J, Palacio-Bielsa A, Vernière C, López MM, Pruvost O. 2016. Multilocus variable number of tandem repeat analysis reveals multiple introductions in Spain of Xanthomonas arboricola pv. pruni, the causal agent of bacterial spot disease of stone fruits and almond. PloS one 11:e0163729. DOI: 10.1371/journal.pone.0163729
  • Merda D, Bonneau S, Guimbaud JF, Durand K, Brin C, Boureau T, Lemaire C, Jacques M-A, Fischer-Le Saux M. 2016. Recombination-prone bacterial strains form a reservoir from which epidemic clones emerge in agroecosystems. Environ Microbiol Rep 8:572-581. DOI: 10.1111/1758-2229.12397
  • Michel E, Monfort C, Deffrasnes M, Guezenec S, Lhomme E, Barret M, Sicard D, Dousset X, Onno B. 2016. Characterization of relative abundance of lactic acid bacteria species in French organic sourdough by cultural, qPCR and MiSeq high-throughput sequencing methods. Internat J Food Microbiol 239:35-43. DOI: 10.1016/j.ijfoodmicro. 2016. 07.034
  • Rezki S, Campion C, Iacomi-Vasilescu B, Préveaux A, Toualbia Y, Bonneau S, Briand M, Laurent E, Hunault G, Simoneau P, Jacques M-A, Barret M. 2016. Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms. Peer J 4:e1923. DOI: 10.7717/peerj.1923

2015

  • Aznar A, Chen NWG, Thomine S, Dellagi A. 2015. Immunity to plant pathogens and iron homeostasis. Plant Sci 240:90-7. DOI: 10.1016/j.plantsci. 2015. 08.022
  • Barret M, Briand M, Bonneau S, Préveaux A, Valière S, Bouchez O, Hunault G, Simoneau P, Jacques MA. 2015. Emergence shapes the structure of the seed-microbiota. Appl Environ Microbiol 81:1257-1266. DOI: 10.1128/AEM.03722-14
  • Bolot S, Cerutti A, Carrère S, Arlat M, Fischer-Le Saux M, Portier P, Poussier S, Jacques M-A, Noël LD. 2015.Genome sequences of the race 1 and race 4 Xanthomonas campestris pv. campestris strains CFBP 1869 and CFBP 5817.Genome Announc 3:e01023-15. DOI: 10.1128/genomeA.01023-15
  • Campillo T, Luna E, Portier P, Fischer-Le Saux M, Lapitan N, Tisserat NA, Leach JE. 2015. Erwinia iniecta sp. nov, isolated from Russian wheat aphids (Diuraphis noxia). Int J Syst Environ Microbiol 65:3625-3633. DOI: 10.1099/ijsem.0.000466
  • Cesbron C, Briand M, Essakhi S, Gironde S, Boureau T, Manceau C, Fischer-Le Saux M, Jacques MA. 2015.Comparative genomics of pathogenic and nonpathogenic strains of Xanthomonas arboricola unveil molecular and evolutionary events linked to pathoadaptation. Front Microbiol 6:1126. DOI: 10.3389/fpls. 2015. 01126
  • Cunty A, Cesbron S, Poliakoff F, Jacques M-A Manceau C. 2015.The origin of the outbreak in France of Pseudomonas syringae pv. actinidiae biovar 3, the causal agent of bacterial canker of Kiwifruit, revealed by a Multilocus Variable-number of Tandem Repeat Analysis. Appl Environ Microbiol 81:6773– 6789. DOI: 10.1128/AEM.01688-15.
  • Cunty A, Poliakoff F, Rivoal C, Cesbron S, Fischer-Le Saux M, Lemaire C, Jacques M-A, Manceau C and Vanneste JL. 2015. Characterization of Pseudomonas syringae pv. actinidiae (Psa) isolated from France and assignment of Psa biovar 4 to a de novo pathovar: Pseudomonas syringae pv. actinidifoliorum pv. nov. Plant Pathol 64:582–596 DOI: 10.1111/ppa.12297
  • Degrave A, Siamer S, Boureau T, Barny MA. 2015. The AvrE superfamily: Ancestral type III effectors involved in suppression of PAMP-triggered immunity. Mol Plant Pathol 16:899–890 DOI: 10.1111/mpp.12237
  • Deveau A, Barret M, Diedhiou AG, Leveau J, de Boer W, Martin F, Sarniguet A, Fery-Klett P. 2015. Pairwise Transcriptomic Analysis of the Interactions Between the Ectomycorrhizal Fungus Laccaria bicolor S238N and Three Beneficial, Neutral and Antagonistic Soil Bacteria. Microb Ecol 69:146-159. DOI: 10.1007/s00248-014-0445
  • Essakhi S, Cesbron S, Fischer-Le Saux M, Bonneau S, Jacques M-A, Manceau C. 2015.Phylogenetic and variable-number tandem-repeat analyses identify nonpathogenic Xanthomonas arboricola lineages lacking the canonical type III secretion system. Appl Environ Microbiol 81:5395-5410. DOI: 10.1128/AEM.00835-15.
  • Fischer-Le Saux M, Bonneau S, Essakhi S, Manceau C, Jacques M-A. 2015. Aggressive emerging pathovars of Xanthomonas arboricola represent widespread epidemic clones that are distinct from poorly pathogenic strains, as revealed by multilocus sequence typing. Appl Environ Microbiol 81:4651-4668. DOI: 10.1128/aem.00050-15
  • Pesce C, Bolot S, Berthelot E, Bragard C, Cunnac S, Fischer-Le Saux M, Portier P, Arlat M, Gagnevin L, Jacques M-A, Noël LD, Carrère S, Koebnik R. 2015.Draft genome sequence of Xanthomonas translucens pv. graminis pathotype strain CFBP 2053. Genome Announc 3:e01174-15. DOI: 10.1128/genomeA.01174-15
  • Pesce C, Bolot S, Cunnac S, Portier P, Fischer-Le Saux M, Jacques M-A, Gagnevin L, Arlat M, Noël LD, Carrère S, Bragard C, Koebnik R. 2015. High-quality draft genome sequence of the Xanthomonas translucens pv. cerealis pathotype strain CFBP 2541.Genome Announc 3:e01574-14. DOI: 10.1128/genomeA.01574-14
  • Rousseau C, Hunault G, Gaillard S, Bourbeillon J, Montiel G, Simier P, Campion C, Jacques MA, Belin E, Boureau T. 2015. Phenoplant: A web resource for the exploration of large Chlorophyll Fluorescence Image datasets. Plant Methods 11:24 DOI: 10.1186/s13007-015-0068-4
  • Roux B, Bolot S, Guy E, Denancé N, Lautier M, Jardinaud M.-F, Fischer-Le Saux M, Portier P, Jacques M-A, Gagnevin L, Pruvost O, Lauber E, Arlat M, Carrère S, Koebnik R, Noël LD. 2015. Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome. BMC Genomics 16:975. DOI: 0.1186/s12864-015-2190-0
  • Terrasson E, Darrasse A, Righetti K, Buitink J, Lalanne D, Ly Vu B, Pelletier S, Bolingue W, Jacques M-A, Leprince O. 2015. Identification of a molecular dialogue between developing seeds of Medicago truncatula and seedborne xanthomonads. J Exp Bot 66 :3737-3752 DOI: 10.1093/jxb/erv167

2014

  • Ameur A, Ennaji MM, Cesbron S, Manceau C, Rhallabi N, Achbani EH 2014. Characterizationof Moroccan Population of ErwiniaAmylovora, the Causal Agent of Fire Blighton Rosacea. International Journal of Bioscience, 4(3), 200–203
  • Aznar A., Chen N.W.G., Rigault M., Riache N., Joseph D., Desmaële D., Mouille G., Boutet S., Soubigou-Taconnat L., Renou J.P., Thomine S., Expert D., Dellagi A. 2014. Scavenging iron: a novel mechanism of plant immunity activation by microbial siderophores. Plant Physiology, 164: 113
  • Bull CT, Coutinho TA, Denny TP, Firrao G, Fischer-Le Saux M, Li X, Saddler GS, Scortichini M, Stead DE, Takikawa Y. 2014. LIST OF NEW NAMES OF PLANT PATHOGENIC BACTERIA (2011-2012). J. Plant Pathol, 96:223-226
  • Cesbron S, Pothier J, Gironde S, Jacques M-A, Manceau C 2014. Development of multilocus vairable-number tandem repeat analysis (MLVA) for Xanthomonas arboricola pathovars. Journal of Microbiological Methods, 100 : 84-90
  • Cunty A, Poliakoff F, Rivoal C, Cesbron S, Fischer-Le Saux M, Lemaire C, Jacques M-A, Manceau C and Vanneste JL. 2014. Characterization of Pseudomonas syringae pv. actinidiae (Psa) isolated from France and assignment of Psa biovar 4 to a de novo pathovar: Pseudomonas syringae pv. actinidifoliorum pv. nov. Plant Pathology, doi:10.1111/ppa.12297
  • Egan F., Barret M., O'Gara F. 2014. The SPI-1-like Type III secretion system : more roles than you think. Frontiers in Plant Science, 5:34
  • Gagnevin L, Bolot S, Gordon JL, Pruvost O, Vernière C, Robène I, Arlat M, Noël LD, Carrière S, Jacques M-A, Koebnik R. 2014. Draft genome sequence of Xanthomonas axonopodis pv. allii strain CFBP 6369. Genome Announcement, 2(4):e00727-14
  • Grimault V., Olivier V.,Rolland M., Darrasse A. and Jacques M.-A. 2014. Seed health testing methods. 7-021: Detection of Xanthomonas axonopodis pv. phaseoli on Phaseolus vulgaris. ISTA (ed) Intenational rules for seed testing. Annexe to Chapter 7: Seed Health Methods, 7-021:1-20
  • Indiana A, Briand M, Arlat M, Gagnevin L, Koebnik R, Noël LD, Portier P, Darrasse A, Jacques MA. 2014. Draft genome sequence of the flagellated Xanthomonas fuscans subsp. fuscans strain CFBP 4884. Genome Announc, 2(5):e00966-14
  • Vayssier-Taussat M, E Albina , C Citti , J-F Cosson, M-A Jacques, M-H Lebrun, Y LeLoir, M Ogliastro, M-A Petit, P  Roumagnac and T Candresse. 2014. Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics. Frontiers in Cellular And Infection Microbiology, 04:29
  • Wonni I., Ouedrogo L., Dao S., Tekete C., Koita O., Taghouti G., Portier P., Szurek B., Verdier V. 2014. First report of Cassava Bacterial Blight caused by Xanthomonas axonopodis pv. manihotis in Burkina Faso. Plant Disease, dx.doi.org/10.1094/PDIS-03-14-0302-PDN

2013

  • Cunnac S., Bolot S., Forero Serna N., Ortiz E., Szurek B, Noël L., Arlat M., Jacques MA, Gagnevin L., Carrere S., Nicole M.,  Koebnik R. 2013. High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains. Genome Announcements, 1(4)  e00674-13
  • Darrasse A, Carrere S, Barbe V, Boureau T, Arrieta-Ortiz M, Bonneau S, Briand M, Brin C, Cociancich S, Durand K, Fouteau S, Gagnevin L, Guerin F, Guy E, Indiana A, Koebnik R, Lauber E, Munoz A, Noel L, Pieretti I, Poussier S, Pruvost O, Robene-Soustrade I, Rott P, Royer M, Serres-Giardi L, Szurek B, van Sluys M-A, Verdier V, Verniere C, Arlat M, Manceau C, Jacques M-A. 2013. Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads. BMC Genomics, 14:1471-2164
  • Darrasse A, Bolot S, Serres-Giardi L, Charbit E, Boureau T, Fisher-Le Saux M, Briand M, Arlat M, Gagnevin L, Koebnik R, Noël LD, Carrère S, Jacques MA. 2013. High-Quality Draft Genome Sequences of Xanthomonas axonopodispv. glycines Strains CFBP 2526 and CFBP 7119. Genome  Announc, 1:e01036-13
  • Jacques MA, Bolot S, Charbit E, Darrasse A, Briand M, Arlat M, Gagnevin L, Koebnik R, Noël LD, Portier P, Carrère S, Boureau T.. 2013. High-Quality Draft Genome Sequence of Xanthomonas alfalfae subsp. alfalfae Strain CFBP 3836. Genome Announc., 1:e01035-13
  • Iwata A., Tek A.L., Richard M.M.S., Abernathy B., Fonsêca A., Schmutz J., Chen N.W.G., Thareau V., Magdelenat G., Li Y., Murata M., Pedrosa-Harand A., Geffroy V., Nagaki K., Jackson S.A. 2013. Identification and characterization of functional centromeres of the common bean. Plant Journal, 76: 47–60
  • Richard M.M.S., Chen N.W. G., Thareau V., Pflieger S., Blanchet S., Pedrosa-Harand A., Iwata A., Chavarro C., Jackson S.A., Geffroy V. 2013. The subtelomeric khipu satellite repeat from Phaseolus vulgaris: lessons learned from the genome analysis of the Andean genotype G19833. Frontiers in Plant Science, 4: 1–14
  • Arrieta-Ortiz ML, Rodríguez-R LM, Pérez-Quintero AL, Poulin L, Díaz AC, Rojas NA, Bart R, Boch J, Boureau T, Darrasse A, David P, Dugé de Bernonville T, Fontanilla P, Gagnevin L, Guérin F, Jacques MA, Lauber E, Lefeuvre P., Medina C., Medina E, Montenegro N, Muñoz Bodnar A, Noël LD, Ortiz Quiñones JF, Osorio D, Pardo C, Patil PB, Poussier S, Pruvost O, Restrepo Benavides M, Robène-Soustrade I, Ryan R, Tabima J, Trujillo C, Urrego Morales OG, Vernière C, Carrere S, Verdier V, Szurek B, Restrepo S, López C, Koebnik R, Bernal A.. 2013. Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. manihotis strain CIO151. PLoS One, 8(11)e79704
  • Belin E., Rousseau D., Boureau T., Caffier V. 2013 Thermography versus chlorophyll fluorescence imaging for detection and quantification of apple scab. Computers and Electronics in Agriculture, 90:159-163
  • Bolot S., Munoz-Bodnar A., Cunnac S., Ortiz  E., Szurek B., Noël L., Arlat M., Jacques M-A., Gagnevin L., Portier P., Fischer-Le Saux M., Carrere S. and Koebnik R. 2013 .Draft Genome Sequence of the Xanthomonas cassavae Type Strain CFBP 4642. Genome Announcements,1(4)
  • Boureau T., Kerkoud M., Chhel F., Hunault G., Darrasse A., Brin C., Durand K., Hajri A., Poussier S, Manceau C., Lardeux F., Saubion F., Jacques M-A. 2013 A multiplex-PCR assay for identification of the quarantine plant pathogen Xanthomonas axonopodis pv. phaseoli. Journal of Microbiological Methods, 92:42-50
  • Dejean G, Blanvillain-Baufumé S., Boulanger A., Darrasse A., Dugé de Bernonville T., Girard A.-L., Carrere S., Jamet S., Zischek C., Lautier M., Solé M., Büttner D., Jacques M.-A., Lauber E. and M. Arlat.  2013 The xylan utilisation system of the plant pathogen Xanthomonas campestris pv. campestris controls epiphytic life and reveals common features with oligotrophic bacteria and animal gut symbionts. New Phytologist, 198: 899–915
  • Escalon A., Javegny  S., Vernière C., Noël L. D., Vital K., Poussier S, Hajri A, Boureau T, Pruvost O, Arlat M, Gagnevin L 2013 Variations in type III effector repertoires, pathological 1 phenotypes and host range of Xanthomonas citri pv. citri pathotypes. Molecular Plant Pathology, 14(5):483-496
  • Guy E., Genissel A., Hajri A., Chabannes M., David P., Carrere S., Lautier M., Roux B., Boureau T., Arlat M., Poussier S., Noel L. 2013 Natural Genetic Variation of Xanthomonas campestris pv. campestris Pathogenicity on Arabidopsis Revealed by Association and Reverse Genetics Mbio, 4(3) e00538-12
  • Marchi M., Boutin M., Gazengel K., Rispe C., Gauthier JP., Guillerm-Erckelboudt AY., Lebreton L., Barret M., Daval S. and  Sarniguet A. 2013 .Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots. Environmental Microbiology Reports, 5: 393-403
  • Mhedbi-Hajri N., Hajri A, Boureau T., Darrasse A., Durand K., Brin C., Fischer-Lesaux M., Manceau C., Poussier S., Pruvost O., Lemaire C., Jacques M-A. 2013 Evolutionary History of the Plant Pathogenic Bacterium Xanthomonas axonopodis. PlosOne, 8(3):e58474
  • Rousseau C., Belin E., Bove E., Rousseau D., Fabre F., Berruyer R., Guillaumès J., Manceau C., Jacques M-A., Boureau T. 2013 High throughput quantitative phenotyping of plant resistance using chlorophyll fluorescence image analysis. Plant Methods, 9:17
  • Siamer S., Gaubert S., Boureau T., Brisset MN, Barny MA. 2013 Mutational analysis of a predicted double b-propeller domain of the DspA/E effector of Erwinia amylovora. FEMS Microbiology Letters, 342:54-61

2012

  • Boureau T., Kerkoud M., Chhel F., Hunault G., Darrasse A., Brin C., Durand K., Hajri A., Poussier S, Manceau C., Lardeux F., Saubion F., Jacques M-A. 2012. A multiplex-PCR assay for identification of the quarantine plant pathogen Xanthomonas axonopodis pv. phaseoli. Journal of Microbiological Methods, in press. http://dx.doi.org/10.1016/j.mimet.2012.10.012
  • Hajri A, Brin C, Zhao S, David P, Feng JX, Koebnik R, Szurek B, Verdier V, Boureau T, Poussier S. 2012. Multilocus sequence analysis and type III effector repertoire mining provide new insights into the evolutionary history and virulence of Xanthomonas oryzae. Molecular Plant Pathology, 13(3):288-302. DOI: 10.1111/j.1364-3703.2011.00745.x
  • Hajri A, Pothier JF, Fischer-Le Saux M, Bonneau S, Poussier S, Boureau T, Duffy B, Manceau C, 2012. Type three effector genes distribution and sequence analysis provides new insights into pathogenicity of plant pathogenic Xanthomonas arboricola. APPLIED AND ENVIRONMENTAL MICROBIOLOGY , 78(2): 371-384   DOI: 10.1128/AEM.06119-11.
  • Jacques M.-A., K. Durand, G. Orgeur, S. Balidas, C. Fricot, S. Bonneau, A. Quilévéré, C. Audusseau, V. Olivier, V. Grimault, et R. Mathis, 2012. Phylogenetic analysis and polyphasic characterization of Clavibacter michiganensis strains isolated from tomato seeds reveal that non-pathogenic strains are distinct from C. michiganensis subsp. michiganensis. Appl. Environ. Microbiol, 78(23):8388
  • Pieretti I., M. Royer, V. Barbe, S. Carrere, R. Koebnik, , A. Couloux, A. Darrasse, J. Gouzy, M.-A. Jacques, E. Lauber, C. Manceau, S. Mangenot, S. Poussier, B. Segurens, B. Szurek, V. Verdier, M. Arlat, D. Gabriel, P. Rott et S. Cociancich. 2012. Genomic insights into strategies used by Xanthomonas albilineans with its reduced artilleryto spread within sugarcane xylem vessels. BMC Genomics, 13:658

Brevets

  • Procédé de dépistage de Xanthomonas axonopodis pv. phaseoli. Publication 2970480, 20 juillet 2012.
    Inventeurs: Boureau T., Chhel F., Hunault G., Kerkoud M., Lardeux F., Manceau C., Poussier S., Saubion F.
    Créateurs: Bourgeais C., Brin C., Danilo B., Hajri A.

2011

  • Zamani Z., M. Bahar, M.-A. Jacques, M.R. Lak and A. Akhavan. 2011. Genetic diversity of the common bacterial bligt pathogen of bean, Xanthomonas axonopodis pv. phaseoli, in Iran revealed by rep-PCR and PCR-RFLP analyses. World J. Microbiol. Biotechnol. DOI 10.1007/s11274-011-0705-7
  • Boureau T, Siamer S, Perino C, Gaubert S, Patrit O, Degrave A, Fagard M, Chevreau E, Barny MA., 2011. The HrpN effector of Erwinia amylovora, which is involved in type III translocation, contributes directly or indirectly to Callose elicitation on apple leaves. Mol Plant Microbe Interact. 2011 May;24(5):577-84.
  • Mhedbi-Hajri N., A. Darrasse, S. Pigné, K. Durand, S. Fouteau, V. Barbe, C. Manceau, C. Lemaire and M.-A. Jacques. 2011. Sensing and adhesion are adaptive functions in the plant pathogenic xanthomonads. BMC Evolutionary Biology 2011, 11:67. (IF 3,70)
  • Mhedbi-Hajri N., M.-A. Jacques, and R. Koebnik. 2011. Adhesion Mechanisms of Plant-Pathogenic Xanthomonadaceae. In D. Linke, A. Goldman (eds.), Bacterial Adhesion, Advances in Experimental Medicine and Biology 715, DOI 10.1007/978-94-007-0940-9_5.3.
  • Prunet J.P., Manceau C., Laigret F., Verhaegue. 2011. Identification et caractérisation de Xanthomonas arboricola pv. juglandis. Bactérie responsable du chancre vertical suintant sur noyer en France. Infos CTIFL. Mai 2011 N°271. 37-40.
  • Fabien Chhel, Adrien Goeffon, Frédéric Lardeux, Frédéric Saubion F., Gilles Hunault, Tristan Boureau, 2011. Experimental Approach for Bacterial Strains Characterization. European Conference On Evolutionary Computation, Turin, April 2011. In C. Pizzuti, M.D. Ritchie, and M. Giacobini (Eds.) EvoBIO 2011, LNCS 6623, pp. 135–140. Springer-Verlag Berlin Heidelberg.
  • Fabien Chhel, Adrien Goëffon, Antoine Lafosse, Frédéric Lardeux, Frédéric Saubion, Gilles Hunault, Tristan Boureau, 2011. The bacterial strains characterization problem. In Proceedings of SAC'2011. pp.108~109
  • Fabien Chhel, Adrien Goëffon, Antoine Lafosse, Frederic Lardeux, Frederic Saubion, Gilles Hunault, Tristan Boureau. 2011. On Bacterial Strains Characterization. Symposium on Applied Computing ACM- SAC-TRECK 2011, Mar 21, 2011 - Mar 25, 2011, Taichung, Taiwan. 
  • Fargier E, Fischer-Le Saux M, Manceau C. 2011. A multilocus sequence analysis of Xanthomonas campestris reveals a complex structure within crucifer-attacking pathovars of this species. Syst Appl Microbiol. Apr;34(2):156-65.

2010

  • Darrasse A., A. Darsonval, T. Boureau, M.-N. Brisset, K. Durand and M.-A. Jacques. 2010. Transmission of plant pathogenic bacteria by nonhost seeds without induction of an associated defense reaction at emergence. Appl. Environ. Microbiol. 76 :6787-6796.
  • Costechareyre D., Rhouma A., Lavire C., Portier P., Chapulliot D., Bertolla F., Boubaker A., Dessaux Y. and Nesme X. (2010). Rapid and efficient identification of Agrobacterium species by recA allele analysis. Microbial Ecology 60: 862-872
  • Baker R., Candresse T., Dormannsné Simon E., Gilioli G., Grégoire J-C, Jeger M. J., Evtimova Karadjova O., Lövei G., Makowski D., Manceau C., Navajas M.,  Porta Puglia A., Rafoss T., Rossi V., Schans J., Schrader G., Urek G., Coert van Lenteren J., Vloutoglou I., Winter S. and Zlotina M. 2010. Risk assessment of Gibberella circinata for the EU territory and identification and evaluation of risk management options. EFSA Journal 2010 ; 8(6) :1620 (93 pages).
  • Baker R., Candresse T., Dormannsné Simon E., Gilioli G., Grégoire J-C, Jeger M. J., Evtimova Karadjova O., Lövei G., Makowski D., Manceau C., Navajas M.,  Porta Puglia A., Rafoss T., Rossi V., Schans J., Schrader G., Urek G., Coert van Lenteren J., Vloutoglou I., Winter S. and Zlotina M. 2010. Risk assessment of the oriental chestnut gall wasp, Dryocosmus kuriphilus for the EU territory and identification and evaluation of risk management options. EFSA Journal 2010 ; 8 (6) : 1619 (114 pages).
  • Baker R., Candresse T., Dormannsné Simon E., Gilioli G., Grégoire J-C, Jeger M. J., Evtimova Karadjova O., Lövei G., Makowski D., Manceau C., Navajas M.,  Porta Puglia A., Rafoss T., Rossi V., Schans J., Schrader G., Urek G., Coert van Lenteren J.,  Vloutoglou I., Winter S. and Zlotina M. 2010. Scientific opinion on a quantitative pathway analysis of the likelihood of Tilletia indica M. introduction into EU with importation of US wheat. EFSA Journal 2010 ; 8 (6) : 1621 (88 pages).
  • Bull CT, Manceau C, Lydon J, Kong H, Vinatzer BA, Fischer-Le Saux M. 2010. Pseudomonas cannabina pv. cannabina pv. nov., and Pseudomonas cannabina pv. alisalensis (Cintas Koike and Bull, 2000) comb. nov., are members of the emended  species Pseudomonas cannabina (ex Sutic & Dowson 1959) Gardan, Shafik, Belouin, Brosch, Grimont & Grimont 1999. Syst Appl Microbiol. 2010 Apr;33(3):105-15

2009

  • Darsonval A., A. Darrasse, K .Durand, C. Bureau, S. Cesbron et M.-A. Jacques. 2009. Adhesion and fitness in the bean phyllosphere and transmission to seeds of Xanthomonas fuscans subsp. fuscans. Molecular Plant-Microbes Interactions 22:747-757.
  • Jacques M.-A., Luçon N. et S. Houdault. 2009. Clove-transmissibility of Pseudomonas salomonii, the causal agent of ‘Café au lait’ disease of garlic. European Journal of Plant Pathology 124:695–700.
  • Pieretti I., M. Royer, V. Barbe, S. Carrere, R. Koebnik, S. Cociancich, A. Couloux, A. Darrasse, J. Gouzy, M.-A. Jacques, E. Lauber, C. Manceau, S. Mangenot, S. Poussier, B. Segurens, B. Szurek, V. Verdier, M. Arlat et P. Rott. 2009. The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae. BMC Genomics 10:616.
  • Pruvost O., C. Savelon, C. Boyer, F. Chiroleu, L. Gagnevin et M.-A. Jacques. 2009. Populations of Xanthomonas citri pv. mangiferaeindicae from asymptomatic mango leaves are primarily endophytic. Microbial Ecology 58:170–178
  • Ryan RP, Koebnik R, Szurek B, Boureau T, Bernal A, Bogdanove A, Dow JM. Passing GO (gene ontology) in plant pathogen biology: a report from the Xanthomonas Genomics Conference. Cell Microbiol. 2009 Dec;11(12):1689-96.
  • Hajri A, Brin C, Hunault G, Lardeux F, Lemaire C, Manceau C, Boureau T, Poussier S. A "repertoire for repertoire" hypothesis: repertoires of type three effectors are candidate determinants of host specificity in Xanthomonas. PLoSOne. 2009 Aug 14;4(8):e6632.
  • Baker R., Candresse T., Dormannsné Simon E., Gilioli G., Grégoire J-C, Jeger M. J., Evtimova Karadjova O., Lövei G., Makowski D., Manceau C., Navajas M.,  Porta Puglia A., Rafoss T., Rossi V., Schans J., Schrader G., Urek G., Coert van Lenteren J.,  Vloutoglou I., Winter S. and Zlotina M. 2009. Evaluation of a pest risk analysis on Thaumetopoea processionea L., the oak processionary moth, prepared by the UK and extension of its scope to the EU territory. . EFSA Journal 2019 1195, 1-64.
  • Baker R., Candresse T., Dormannsné Simon E., Gilioli G., Grégoire J-C, Jeger M. J., Evtimova Karadjova O., Lövei G., Makowski D., Manceau C., Navajas M.,  Porta Puglia A., Rafoss T., Rossi V., Schans J., Schrader G., Urek G., Coert van Lenteren J., Vloutoglou I., Winter S. and Zlotina M. 2009. Mortality verification of pinewood nematode from high temperature treatment of shavings. EFSA Journal 2019 1055, 1-19.
  • Baker R., Caffier D., Choiseul J.W., De Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lanteren J.C., Vloutoglou I. , 2009. EFSA Scientific Panel on Plant Health (ITA). Evaluation of pest risk assessments and risk management options prepared to justify requests for phytosanitary measures under Council Directive 2000/29/EC - Guidance of the Panel on Plant Health. Parma (ITA) : EFSA - European Food Safety Authority, 18 p. EFSA Journal, (1194).
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Makowski D., Manceau C., Manici L., Oude Lansink A., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lanteren J.C., Vloutoglou I., 2009. EFSA Scientific Panel on Plant Health (ITA). Mortality verification of pinewood nematode from high temperature treatment of shavings. Parma (ITA) : EFSA - European Food Safety Authority, 19 p.  EFSA Journal, (1055).
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lanteren J.C., Vloutoglou I., 2009. EFSA Scientific Panel on Plant Health (ITA). Evaluation of a pest risk analysis on Thaumetopoea processionea L., the oak processionary moth, prepared by the UK and extension of its scope to the EU territory. Parma (ITA) : EFSA - European Food Safety Authority, 64 p. EFSA Journal, (1195).
  • Baker R., Candresse T., Dormannsne-Simon E., Gilioli G., Grégoire J.C., Jeger M.J., Karadjova O.E., Lövei G., Makowski D., Manceau C., Navajas Navarro M., Porta Puglia A., Rafoss T., Rossi V., Schans J., Schrader G., Urek G., Van Lanteren J.C., Vloutoglou I., Winter S., Zlotina M., 2009. EFSA Scientific Panel on Plant Health (ITA). Statement on the dossier for a derogation request of the US authorities concerning cold-treated strawberry plants intended for planting. Parma (ITA) : EFSA - European Food Safety Authority, EFSA Journal, 7 (12), (1416).

Brevets

Moyens et méthodes de détection et d’identification d’une nouvelle bactérie responsable d’affections phytosanitaires sur des plantes (courgette) et nouvelles plantes résistantes. Manceau C., Gironde S., Briand B., Lybeert H., 2009. Brevet ’invention’ n° 1000056902.

2008

  • Darsonval A., A. Darrasse, D. Meyer, M. Demarty, K. Durand, C. Bureau, C. Manceau et M.-A. Jacques. 2008. Type III secretion system of Xanthomonas fuscans subsp. fuscans is involved in phyllosphere colonization process and in transmission to seeds of susceptible bean. Applied and Environmental Microbiology 74:2669-2678.
  • Young J. M., C. Allen, T. Coutinho, T. Denny, J. Elphinstone, M. Fegan, M. Gillings, T. R. Gottwald, J. H. Graham, N. S. Iacobellis, J. D. Janse, M.-A. Jacques, M. M. Lopez, C. E. Morris, N. Parkinson, P. Prior, O. Pruvost, J. Rodrigues Neto, M. Scortichini, Y. Takikawa, and C. D. Upper. 2008. Plant Pathogenic Bacteria as Biological Weapons Real Threats? Phytopathology 98:1060-1065.
  • Marie-Anne Barny, Tristan Boureau, Alexandre Degrave, Mathilde Fagard, François Bouteau, Stéphane Gaubert, David Reboutier, Marie Noelle Brisset, 2008. Type III effectors of E. amylovora: Synergistic and antagonistic effects PROCEEDINGS OF THE ELEVENTH INTERNATIONAL WORKSHOP ON FIRE BLIGHT  Book Series: ACTA HORTICULTURAE   Volume: 793   Pages: 215-220.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Ralstonia sp. pathogenic agent of banana blood disease considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health . EFSA Journal, 649: 1-23.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Mycosphaerella fijiensis considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 650: 1-24.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Banana bract mosaic virus considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 651:1-23.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Mycosphaerella eumusae considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 663:1-20.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Trachysphaera fructigena considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 664:1-23.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Phyllosticta musarum [Cooke] van der Aa considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 665: 1-22
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Banana bunchy top virus (BBTV) considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 666:1-20.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Banana streak virus (BSV) considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 667:1-24.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Fusarium oxysporum. f. sp. cubense considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 668: 1-22
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L. Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Xanthomonas campestris pv. musacearum, considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 669: 1-30.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Odoiporus longicollis considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 670: 1-14.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Nacoleia octasema considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 671: 1-15.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Erionota thrax L. considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 672: 1-23.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Ralstonia solanacearum race 2 considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 673: 1-27.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D. Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Aceria sheldoni (Ewing) considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 67: 1-14.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Brevipalpus californicus, Brevipalpus phoenicis and Brevipalpus obovatus (Acari: Tenuipalpidae) considered by France as harmful in the French overseas departments of Guadeloupe and Martinique - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 678: 1-25.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Panonychus citri considered by France as harmful in French overseas departments of French Guiana and Martinique - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 679: 1-17.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Prays citri considered by France as harmful in French overseas departments of French Guiana, Guadeloupe and Martinique - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 680: 1-22.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Prays endocarpa considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 681: 1-16.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Xanthomonas axonopodis pv. citri considered byFrance as harmful in French overseas departments of French Guiana, Guadeloupe and Martinique - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 682: 1-22.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Sphaeropsis tumefaciens Hedges considered by France as harmful in French overseas departments of French Guiana, Guadeloupe and Martinique - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 683: 1-16.
  • Baker R., Caffier D., Choiseul J. W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Citrus chlorotic dwarf virus considered by France as harmful in the French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 684: 1-17.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Citrus exocortis viroid (CEVd) considered by France as harmful in French overseas department of Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 685: 1-17.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Citrus yellow mosaic virus or Citrus mosaic badnavirus considered by France as harmful in the French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 686: 1-16.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Hop stunt viroid (HSVd) considered by France as harmful in the French overseas department of Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 687: 1-17.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink, A.; Makowski, D.; Manceau, C.; Manici, M. L.; Perdikis, D.; Porta Puglia, A.; Schans, J.; Schrader, G.; Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Metcalfa pruinosa (Say) considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 701: 1- 17.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest isk assessment made by France on Parlatoria ziziphi (Lucas) considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 702: 1-16.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A., Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Ceratocystis fimbriata considered by France as harmful in French overseas departments of French Guiana, Guadeloupe, Martinique and Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 703: 1-21.
  • Baker R., Caffier D., Choiseul J.W., de Clercq P., Dormannsne-Simon E., Gerowitt B., Karadjova O.E., Lövei G., Oude Lansink A., Makowski D., Manceau C., Manici M.L., Perdikis D., Porta Puglia A, Schans J., Schrader G., Steffek R., Strömberg A., Tiilikkala K., Van Lenteren J.C., Vloutoglou I., 2008. Pest risk assessment made by France on Mycosphaerella citri considered by France as harmful in French overseas department of Réunion - Scientific Opinion of the Panel on Plant Health. EFSA Journal, 704: 1-19.
  • Alavi SM, Sanjari S, Durand F, Brin C, Manceau C, Poussier S. 2008. Assessment of the genetic diversity of Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans as a basis to identify putative pathogenicity genes and a  type III secretion system of the SPI-1 family by multiple suppression subtractive hybridizations. Appl Environ Microbiol. 2008 May;74(10):3295-301.

2007

  • Darrasse A., C. Bureau, R. Samson, C. E. Morris et M. A. Jacques. 2007. Contamination of bean seeds by Xanthomonas axonopodis pv. phaseoli associated with low bacterial densities in the phyllosphere under field and greenhouse conditions. European Journal of Plant Pathology 119:203-215.
  • Gonzalez C, Szurek B, Manceau C, Mathieu T, Séré Y, Verdier V. 2007. Molecular and  pathotypic characterization of new Xanthomonas oryzae strains from West Africa. Mol Plant Microbe Interact. 2007 May;20(5):534-46.
  • Alavi SM, Poussier S, Manceau C. 2007. Characterization of ISXax1, a novel insertion sequence restricted to Xanthomonas axonopodis pv. phaseoli (variants fuscans and non-fuscans) and Xanthomonas axonopodis pv. vesicatoria. Appl Environ Microbiol. 2007 Mar;73(5):1678-82.

2006

  • Portier P. Fisher-Le Saux M., Mougel C., Lerondelle C., Chapulliot D., Thioulouse J. and Nesme X. (2006). Identification of genomic species in Agrobacterium biovar1 by AFLP genomic markers. App. Env. Microb. 72(11): 7123-7131
  • Boureau T, ElMaarouf-Bouteau H, Garnier A, Brisset MN, Perino C, Pucheu I, Barny MA. DspA/E, a type III effector essential for Erwinia amylovora pathogenicity and growth in planta, induces cell death in host apple and nonhost  tobacco plants. Mol Plant Microbe Interact. 2006 Jan;19(1):16-24.
  • Pujol M, Badosa E, Manceau C, Montesinos E. 2006. Assessment of the environmental fate of the biological control agent of fire blight, Pseudomonas fluorescens EPS62e, on apple by culture and real-time PCR methods. Appl Environ Microbiol. 2006 Apr;72(4):2421-7.

Modification date : 19 December 2023 | Publication date : 11 May 2011 | Redactor : Marie Simonin